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<div class="contents">
&#160;

<h3><a class="anchor" id="index_a"></a>- a -</h3><ul>
<li>AllocateMemoryFlowModel()
: <a class="el" href="numerical_8cc.html#a371bc32b72323690def17ba8205f4fd3">numerical.cc</a>
</li>
<li>AllocateMemoryForcing()
: <a class="el" href="numerical_8cc.html#a9da8704200ecb683a74555de7c432d29">numerical.cc</a>
</li>
<li>AllocateMemoryOutput()
: <a class="el" href="numerical_8cc.html#a3207ff87c887103ebec0329ac0a1ad66">numerical.cc</a>
</li>
</ul>


<h3><a class="anchor" id="index_b"></a>- b -</h3><ul>
<li>Ball_Berry()
: <a class="el" href="mlcan_8cc.html#a364adfaa16a7116a14e4ebc7b8330ef4">mlcan.cc</a>
</li>
<li>BLC_Nikolov()
: <a class="el" href="mlcan_8cc.html#a7dd1d9da85ccda593a7a98b9397bf0a2">mlcan.cc</a>
</li>
</ul>


<h3><a class="anchor" id="index_c"></a>- c -</h3><ul>
<li>CanopyModel()
: <a class="el" href="mlcan_8h.html#ac8fc52bdf29c56d534e8893ee1364822">mlcan.h</a>
, <a class="el" href="mlcan_8cc.html#ac8fc52bdf29c56d534e8893ee1364822">mlcan.cc</a>
</li>
<li>CheckArgument()
: <a class="el" href="io_8cc.html#aed17259f5bd71174ccfc20ed91316e3d">io.cc</a>
</li>
<li>CheckCudaCall()
: <a class="el" href="main_8h.html#a87c5ce86d74764a06a13b73dff013870">main.h</a>
</li>
<li>CopyDataToDevice()
: <a class="el" href="main_8h.html#a762a56db325b0a56ade192fef8bb55b7">main.h</a>
</li>
<li>CubicSolver()
: <a class="el" href="mlcan_8cc.html#a651bc5153d7d9adc8b74f0dd5e48019f">mlcan.cc</a>
</li>
</ul>


<h3><a class="anchor" id="index_d"></a>- d -</h3><ul>
<li>Diffuse_Fraction()
: <a class="el" href="mlcan_8cc.html#a7e6ee5741c12b15ee35ff8d9a2354f63">mlcan.cc</a>
</li>
</ul>


<h3><a class="anchor" id="index_e"></a>- e -</h3><ul>
<li>EstimateFluxes()
: <a class="el" href="global_8h.html#a0b7e208f3c8e879d7e3f7e752f742564">global.h</a>
</li>
<li>Evap_Condensation_Adjust()
: <a class="el" href="mlcan_8cc.html#afd66277d8e2b8f57bbdd7d6ebcd931e3">mlcan.cc</a>
</li>
<li>ExtractNumber()
: <a class="el" href="io_8cc.html#afb342eaf94dc0d169ac6731cde547f0d">io.cc</a>
</li>
</ul>


<h3><a class="anchor" id="index_f"></a>- f -</h3><ul>
<li>FinalizeMPI()
: <a class="el" href="main_8h.html#a24594871c51ae6b8ca2d6a8c7794d6b8">main.h</a>
, <a class="el" href="mpienv_8cc.html#a24594871c51ae6b8ca2d6a8c7794d6b8">mpienv.cc</a>
</li>
<li>First_Order_Closure_U()
: <a class="el" href="mlcan_8cc.html#aab395c197b44c682ae509335372f3482">mlcan.cc</a>
</li>
<li>FreeDeviceMemory()
: <a class="el" href="numerical_8cc.html#a6bc28844a67a2e527dc321bf4036608d">numerical.cc</a>
</li>
<li>FreeHostMemory()
: <a class="el" href="numerical_8cc.html#a1d9227bd71f2dfba528d9fcc0a2e6fdd">numerical.cc</a>
</li>
</ul>


<h3><a class="anchor" id="index_g"></a>- g -</h3><ul>
<li>GatherRootDensityToMasterAndFilter()
: <a class="el" href="main_8h.html#afb3f68180a7899c43e060d4d4e091038">main.h</a>
, <a class="el" href="host_8cc.html#afb3f68180a7899c43e060d4d4e091038">host.cc</a>
</li>
<li>GatherTranspirationDomain()
: <a class="el" href="subsurface_8h.html#a681a82b548f52be802b1caa96b835bf5">subsurface.h</a>
</li>
<li>GetFileInfo()
: <a class="el" href="main_8h.html#a582f178161d87441eb604256d4da3d17">main.h</a>
, <a class="el" href="io_8cc.html#a582f178161d87441eb604256d4da3d17">io.cc</a>
</li>
<li>GetIterationDifference()
: <a class="el" href="subsurface_8h.html#a7170a7b156941a5c52680e7d36cf722b">subsurface.h</a>
</li>
<li>GetOptionToChar()
: <a class="el" href="parser_8cc.html#af7dac1dc7780ab229a92e08d56b18ee0">parser.cc</a>
, <a class="el" href="parser_8h.html#af7dac1dc7780ab229a92e08d56b18ee0">parser.h</a>
</li>
<li>GetOptionToDouble()
: <a class="el" href="parser_8h.html#a98bd6be40f0ff45d11e2428a0de2022d">parser.h</a>
, <a class="el" href="parser_8cc.html#a98bd6be40f0ff45d11e2428a0de2022d">parser.cc</a>
</li>
<li>GetOptionToInt()
: <a class="el" href="parser_8h.html#a947c0ec72bbb2964d3adff8fbbf21fe4">parser.h</a>
, <a class="el" href="parser_8cc.html#a947c0ec72bbb2964d3adff8fbbf21fe4">parser.cc</a>
</li>
<li>GetOptionToString()
: <a class="el" href="parser_8cc.html#a367ee1cbd911e78775aa22e8c9d2413e">parser.cc</a>
, <a class="el" href="parser_8h.html#a367ee1cbd911e78775aa22e8c9d2413e">parser.h</a>
</li>
</ul>


<h3><a class="anchor" id="index_i"></a>- i -</h3><ul>
<li>IdentifyTopBoundary()
: <a class="el" href="global_8h.html#a5a0c451279640006ccf78eb281fbac9d">global.h</a>
</li>
<li>InitializeMPI()
: <a class="el" href="mpienv_8cc.html#a4a19481ecee412fb5ec4fd04c90adb5d">mpienv.cc</a>
, <a class="el" href="main_8h.html#a4a19481ecee412fb5ec4fd04c90adb5d">main.h</a>
</li>
</ul>


<h3><a class="anchor" id="index_l"></a>- l -</h3><ul>
<li>Leaf_Water_Potential()
: <a class="el" href="mlcan_8cc.html#a1e41d98c793e03a1241ae3e42541bd3b">mlcan.cc</a>
</li>
<li>LeafSolution()
: <a class="el" href="mlcan_8cc.html#ac49c607314e85aeba5047055fa7e3ab5">mlcan.cc</a>
</li>
<li>LEB_Quartic()
: <a class="el" href="mlcan_8cc.html#aa9fd5a03871068d247242ec9ccdae02a">mlcan.cc</a>
</li>
<li>LoadCanopyRootDistributions()
: <a class="el" href="main_8h.html#ae4e7123ba69ff3d9bbd373c5f9611b3e">main.h</a>
, <a class="el" href="io_8cc.html#ae4e7123ba69ff3d9bbd373c5f9611b3e">io.cc</a>
</li>
<li>LoadConfigMLCanModel()
: <a class="el" href="main_8h.html#a1fb8e2a162c61a792a4f6784ae7ceae2">main.h</a>
, <a class="el" href="io_8cc.html#a1fb8e2a162c61a792a4f6784ae7ceae2">io.cc</a>
</li>
<li>LoadFileNetCDF()
: <a class="el" href="io_8cc.html#a51a72364bba641ebdd8d5dfce24b3e13">io.cc</a>
</li>
<li>LoadFlowModelConfig()
: <a class="el" href="main_8h.html#a94d1be3f7a08fb71cc9a747e8bc9c597">main.h</a>
, <a class="el" href="io_8cc.html#a94d1be3f7a08fb71cc9a747e8bc9c597">io.cc</a>
</li>
<li>LoadForcingData()
: <a class="el" href="main_8h.html#a60d0bb17a56ea141fe870e514ef122f0">main.h</a>
, <a class="el" href="io_8cc.html#a60d0bb17a56ea141fe870e514ef122f0">io.cc</a>
</li>
<li>LoadTopography()
: <a class="el" href="io_8cc.html#aa916afa39225dd0fa219a35bef364027">io.cc</a>
, <a class="el" href="main_8h.html#aa916afa39225dd0fa219a35bef364027">main.h</a>
</li>
<li>LongWaveradiation()
: <a class="el" href="mlcan_8cc.html#af82f5ab43661aa733779575bd7c7bd77">mlcan.cc</a>
</li>
<li>LTrim()
: <a class="el" href="parser_8cc.html#a2774f0cb49ae7b9abe7ab255fd3d984d">parser.cc</a>
, <a class="el" href="parser_8h.html#a2774f0cb49ae7b9abe7ab255fd3d984d">parser.h</a>
</li>
<li>LW_Attenuation()
: <a class="el" href="mlcan_8cc.html#a03300519db6333d2ccbe03cadad5c485">mlcan.cc</a>
</li>
</ul>


<h3><a class="anchor" id="index_m"></a>- m -</h3><ul>
<li>main()
: <a class="el" href="main_8cc.html#a3c04138a5bfe5d72780bb7e82a18e627">main.cc</a>
</li>
<li>MappingEigensToClasses()
: <a class="el" href="numerical_8cc.html#a0ed99af9eb630e71a4ad578f83e6ac0c">numerical.cc</a>
</li>
<li>maxcomp()
: <a class="el" href="comps_8h.html#a4b0b4832fb0b2ce9e9013d1a14d1422c">comps.h</a>
</li>
<li>MaxFind()
: <a class="el" href="mlcan_8cc.html#ae9e5909dfe33e47496a314930fe109a0">mlcan.cc</a>
</li>
<li>MaxValue()
: <a class="el" href="mlcan_8cc.html#ab9045c21ec49f70998dc4aacb6e049b9">mlcan.cc</a>
</li>
<li>Micro_Environment()
: <a class="el" href="mlcan_8cc.html#a205b6034b25ec7a7baef4ca8874fb2b2">mlcan.cc</a>
</li>
<li>mincomp()
: <a class="el" href="comps_8h.html#a4b33139d1499f13d6e5795e89541ea90">comps.h</a>
</li>
<li>ModifiedPicardUpdate()
: <a class="el" href="subsurface_8h.html#a2c18d0259c0513ad058a686cf068fd7b">subsurface.h</a>
</li>
</ul>


<h3><a class="anchor" id="index_n"></a>- n -</h3><ul>
<li>NumericalModelKernels()
: <a class="el" href="main_8h.html#aa897f1b92b864e62d9e2d061b84d9524">main.h</a>
, <a class="el" href="numerical_8cc.html#aa897f1b92b864e62d9e2d061b84d9524">numerical.cc</a>
</li>
</ul>


<h3><a class="anchor" id="index_o"></a>- o -</h3><ul>
<li>Order_1_Closure_All()
: <a class="el" href="mlcan_8cc.html#ac5793840ed0ebe12e4aca86a6e51c50d">mlcan.cc</a>
</li>
<li>OverlandFlowModel()
: <a class="el" href="overland_8h.html#ae3e08c48af7e7e2cfb6c0e7e75405ce3">overland.h</a>
</li>
</ul>


<h3><a class="anchor" id="index_p"></a>- p -</h3><ul>
<li>ParseName()
: <a class="el" href="parser_8h.html#ad1eec20e7697906820ed07c2ae631a0f">parser.h</a>
, <a class="el" href="parser_8cc.html#ad1eec20e7697906820ed07c2ae631a0f">parser.cc</a>
</li>
<li>ParserConfigFile()
: <a class="el" href="parser_8cc.html#a1ce00f2a415010b43b1ea0c370b79677">parser.cc</a>
, <a class="el" href="parser_8h.html#a1ce00f2a415010b43b1ea0c370b79677">parser.h</a>
</li>
<li>ParseValue()
: <a class="el" href="parser_8h.html#adc3bdbf87cc8bac72c4eaa7f3ce2bfd0">parser.h</a>
, <a class="el" href="parser_8cc.html#adc3bdbf87cc8bac72c4eaa7f3ce2bfd0">parser.cc</a>
</li>
<li>ParsingCommandsAndConfigurations()
: <a class="el" href="io_8cc.html#aa5d43bf4e37ab8cd5eebd603b72ea5f9">io.cc</a>
, <a class="el" href="main_8h.html#aa5d43bf4e37ab8cd5eebd603b72ea5f9">main.h</a>
</li>
<li>PartitionDomainToProcess()
: <a class="el" href="mpienv_8cc.html#a715aa1cec1044e2e62a4c63ba65f0b13">mpienv.cc</a>
</li>
<li>PH_Dist()
: <a class="el" href="mlcan_8cc.html#a0c7ce598285290c1d764422e829722f2">mlcan.cc</a>
</li>
<li>photosynthesis_C4()
: <a class="el" href="mlcan_8cc.html#a1fd28bf6d278044f31df2ba1f7c45990">mlcan.cc</a>
</li>
<li>Polynomial_Root()
: <a class="el" href="mlcan_8cc.html#a41421f09a37bce9f808b0613a559c06e">mlcan.cc</a>
</li>
<li>Precip_Interception()
: <a class="el" href="mlcan_8cc.html#a567338bf9002e5f6edd29d246b3adf5a">mlcan.cc</a>
</li>
<li>PreRunningFlowModel()
: <a class="el" href="main_8h.html#af7e2e49efca5ebd09279daeef8dac513">main.h</a>
</li>
<li>PrintParsingWarning()
: <a class="el" href="parser_8cc.html#ae47cdfc5b0e511bad19794a0b8a21209">parser.cc</a>
</li>
<li>PrintUsage()
: <a class="el" href="io_8cc.html#a44833dce92422d5aba84dfc6c9ebe0f3">io.cc</a>
</li>
<li>PrintVersion()
: <a class="el" href="io_8cc.html#a1fae5968f70747445d63f63065fb7ef3">io.cc</a>
</li>
</ul>


<h3><a class="anchor" id="index_q"></a>- q -</h3><ul>
<li>QuadraticSolver()
: <a class="el" href="mlcan_8cc.html#a761bd27d1bc7358d39fc9e68354147f0">mlcan.cc</a>
</li>
<li>quarticSolver()
: <a class="el" href="mlcan_8cc.html#ab40cf590913db7d4f3d971ecd1800810">mlcan.cc</a>
</li>
</ul>


<h3><a class="anchor" id="index_r"></a>- r -</h3><ul>
<li>rtbis()
: <a class="el" href="mlcan_8cc.html#aaa27fa110d0a5a3b1dc93bd812ecd720">mlcan.cc</a>
</li>
<li>RTrim()
: <a class="el" href="parser_8h.html#a1ec1463dafb2311bffbb3258f7fa2b0c">parser.h</a>
, <a class="el" href="parser_8cc.html#a1ec1463dafb2311bffbb3258f7fa2b0c">parser.cc</a>
</li>
<li>RunCoupledFlowModel()
: <a class="el" href="main_8h.html#a35c9d3d3dc374ced7d701074e0b3b414">main.h</a>
</li>
</ul>


<h3><a class="anchor" id="index_s"></a>- s -</h3><ul>
<li>SaveMLCanResults()
: <a class="el" href="io_8cc.html#a3c37b53ca5ead19edf630f1071285572">io.cc</a>
</li>
<li>SaveModelResults()
: <a class="el" href="main_8h.html#a06ccda7e927aad51714c254e703c7342">main.h</a>
, <a class="el" href="io_8cc.html#ae64065afa343bdb3a9b5020b27995c4d">io.cc</a>
</li>
<li>SaveOutput1D()
: <a class="el" href="io_8cc.html#ab52595c7230b8869a956e745c3992242">io.cc</a>
</li>
<li>SaveOutput2D()
: <a class="el" href="io_8cc.html#ae69102f2601de3410e4598bf76acb389">io.cc</a>
</li>
<li>SaveOutput3D()
: <a class="el" href="io_8cc.html#a9a3d44a1e7febaf3752ec753855e1de6">io.cc</a>
</li>
<li>SaveResultEntirePeriod()
: <a class="el" href="main_8h.html#a106808d5ba55a54cef12059a6af7f2cc">main.h</a>
, <a class="el" href="io_8cc.html#a106808d5ba55a54cef12059a6af7f2cc">io.cc</a>
</li>
<li>SEB_Remainder()
: <a class="el" href="mlcan_8cc.html#a8895290faf5acc7416e43e5cb0d9716a">mlcan.cc</a>
</li>
<li>SEB_Remainder_return()
: <a class="el" href="mlcan_8cc.html#a74403715db434f72a77fb057e9db4d33">mlcan.cc</a>
</li>
<li>SetBoundaryConditionsHost()
: <a class="el" href="host_8cc.html#a9395c7359209191d0627d4364fd757de">host.cc</a>
</li>
<li>SetCanopyGrid()
: <a class="el" href="io_8cc.html#a14463c5e17e08421310090a1352452dc">io.cc</a>
</li>
<li>SetFlowModelConditions()
: <a class="el" href="main_8h.html#a01482c18a453883899e7979fc631d459">main.h</a>
, <a class="el" href="host_8cc.html#a01482c18a453883899e7979fc631d459">host.cc</a>
</li>
<li>SetInitialConditionsHost()
: <a class="el" href="host_8cc.html#a8c4be326316db9902a1bc84aef95a329">host.cc</a>
</li>
<li>SetMPIGPUMapping()
: <a class="el" href="main_8h.html#a98590f5891351f22d8c51d213bf483a7">main.h</a>
, <a class="el" href="host_8cc.html#a98590f5891351f22d8c51d213bf483a7">host.cc</a>
</li>
<li>SetSoilGrid()
: <a class="el" href="io_8cc.html#a4d65faa4a43f499ccb15284cbe190027">io.cc</a>
</li>
<li>SetTopologyNetwork()
: <a class="el" href="mpienv_8cc.html#ad0565c33ed351121f9cbd7bf1ddfbec8">mpienv.cc</a>
, <a class="el" href="main_8h.html#ad0565c33ed351121f9cbd7bf1ddfbec8">main.h</a>
</li>
<li>SetUpLinearSystemsOverland()
: <a class="el" href="overland_8h.html#a94027c478506356b3aa4f90caf3608d5">overland.h</a>
</li>
<li>SetUpLinearSystemsSubsurface()
: <a class="el" href="subsurface_8h.html#a7d11beefbe583b7a75e23de8c8d84551">subsurface.h</a>
</li>
<li>SetUpMLCanModel()
: <a class="el" href="numerical_8cc.html#a29d53e43523f90ded19f2261651c8780">numerical.cc</a>
</li>
<li>ShortWaveradiation()
: <a class="el" href="mlcan_8cc.html#a9e84aba6ec94a4646483675c1a6cadbf">mlcan.cc</a>
</li>
<li>Soil_Surface_Fluxes()
: <a class="el" href="mlcan_8cc.html#a5fc2ccef00bb96fa1fabf0980d941c19">mlcan.cc</a>
</li>
<li>SubsurfaceEstimateInfiltrationPonding()
: <a class="el" href="subsurface_8h.html#aa50ab032645680562a4a012832f17021">subsurface.h</a>
</li>
<li>SubsurfaceFlowModel()
: <a class="el" href="subsurface_8h.html#aa6e66f3574742d0fab8bc519dfd31e77">subsurface.h</a>
</li>
<li>SW_Attenuation()
: <a class="el" href="mlcan_8cc.html#a16362462b1d6539c17b446a2bc3303fc">mlcan.cc</a>
</li>
</ul>


<h3><a class="anchor" id="index_t"></a>- t -</h3><ul>
<li>ThomasAlgorithm()
: <a class="el" href="mlcan_8cc.html#a2024468692d2852fd2ca6b68b6f976cf">mlcan.cc</a>
</li>
<li>Trim()
: <a class="el" href="parser_8h.html#acbc9630bbabbfed7cd97b5e30f6b3261">parser.h</a>
, <a class="el" href="parser_8cc.html#acbc9630bbabbfed7cd97b5e30f6b3261">parser.cc</a>
</li>
<li>Tuzet_Function()
: <a class="el" href="mlcan_8cc.html#a641130ac54aeb155d97ccd53c90e0efa">mlcan.cc</a>
</li>
</ul>


<h3><a class="anchor" id="index_v"></a>- v -</h3><ul>
<li>vanGenuchten()
: <a class="el" href="global_8h.html#a3d2d7db6a6392ee53e9fd7f691bedf91">global.h</a>
</li>
<li>vanGenuchtenInverse()
: <a class="el" href="global_8h.html#acb52f48c1e4a92ed8afb0108e403494a">global.h</a>
</li>
</ul>


<h3><a class="anchor" id="index_w"></a>- w -</h3><ul>
<li>WaterElevationOverland()
: <a class="el" href="global_8h.html#a210381e80d128184c909894b7ebc0d69">global.h</a>
</li>
</ul>
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